Idealized Channel Problem - Revision history

Wpringle at 03:01, 8 April 2021

2021-04-08T03:01:02Z

← Older revision		Revision as of 23:01, 7 April 2021
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	This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., ~~2020~~. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. ~~In Preparation~~, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen only to limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate more of the inundating phase of the incoming wave.		This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2021. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. Environmental Modelling and Software, 105045. https://doi.org/10.1016/j.envsoft.2021.105045</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. https://doi.org/10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. https://doi.org/10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen only to limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate more of the inundating phase of the incoming wave.

	== Mesh ==		== Mesh ==

Wpringle at 02:08, 9 June 2020

2020-06-09T02:08:50Z

← Older revision		Revision as of 22:08, 8 June 2020
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	This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2020. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. In Preparation, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen only to limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate the inundating phase of the incoming wave.		This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2020. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. In Preparation, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen only to limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate more of the inundating phase of the incoming wave.

	== Mesh ==		== Mesh ==

Wpringle: /* Options/Features Tested */

2020-06-09T02:07:51Z

Options/Features Tested

← Older revision		Revision as of 22:07, 8 June 2020
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	*<code>[[NOUTGV]]</code> = 5: Outputs the global velocities into a netCDF4 [[fort.64 file]].		*<code>[[NOUTGV]]</code> = 5: Outputs the global velocities into a netCDF4 [[fort.64 file]].
	*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).		*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).
	*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files. [[OceanMesh2D]] functions ~~exist for generating~~ the sponge_generator_layer attribute ([https://github.com/CHLNDDEV/OceanMesh2D/blob/Projection/utilities/Calc_Sponge.m Calc_Sponge]), and the input files ([https://github.com/CHLNDDEV/OceanMesh2D/blob/Projection/utilities/Make_f5354.m Make_f5354]).		*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files. [[Grid_Development_and_Editing#OceanMesh2D\|OceanMesh2D]] functions can be used to automatically generate the sponge_generator_layer attribute ([https://github.com/CHLNDDEV/OceanMesh2D/blob/Projection/utilities/Calc_Sponge.m Calc_Sponge]) and the input files ([https://github.com/CHLNDDEV/OceanMesh2D/blob/Projection/utilities/Make_f5354.m Make_f5354]).
	*[[Fort.14_file_format\|IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.		*[[Fort.14_file_format\|IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.

	== References ==		== References ==
	<references />		<references />

Wpringle: /* Options/Features Tested */

2020-06-09T02:06:07Z

Options/Features Tested

← Older revision		Revision as of 22:06, 8 June 2020
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	*<code>[[NOUTGV]]</code> = 5: Outputs the global velocities into a netCDF4 [[fort.64 file]].		*<code>[[NOUTGV]]</code> = 5: Outputs the global velocities into a netCDF4 [[fort.64 file]].
	*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).		*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).
	*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.		*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files. [[OceanMesh2D]] functions exist for generating the sponge_generator_layer attribute ([https://github.com/CHLNDDEV/OceanMesh2D/blob/Projection/utilities/Calc_Sponge.m Calc_Sponge]), and the input files ([https://github.com/CHLNDDEV/OceanMesh2D/blob/Projection/utilities/Make_f5354.m Make_f5354]).
	*[[Fort.14_file_format\|IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.		*[[Fort.14_file_format\|IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.

	== References ==		== References ==
	<references />		<references />

Wpringle at 02:01, 9 June 2020

2020-06-09T02:01:58Z

← Older revision		Revision as of 22:01, 8 June 2020
Line 1:		Line 1:
	This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2020. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. In Preparation, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen to ~~only~~ limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate the inundating phase of the incoming wave.		This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2020. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. In Preparation, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen only to limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate the inundating phase of the incoming wave.

	== Mesh ==		== Mesh ==

Wpringle at 02:01, 9 June 2020

2020-06-09T02:01:35Z

← Older revision		Revision as of 22:01, 8 June 2020
Line 1:		Line 1:
	This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2020. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. In Preparation, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. ~~Find~~ the test at the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite].		This example tests ADCIRC version 55 (and beyond). It tests the simulation of a diurnal tide on a sloping beach with a channel along its centerline (adapted from<ref name=Keith>Roberts, K.J., Dietrich, J.C., Wirasaet, D., Pringle, W.J., Westerink, J.J., 2020. Dynamic Load Balancing for Predictions of Storm Surge and Coastal Flooding. In Preparation, pp.37.</ref>). It tests lateral periodic boundary conditions and the absorption-generation sponge layer<ref name=Pringle>Pringle, W.J., Wirasaet, D., Suhardjo, A., Meixner, J., Westerink, J.J., Kennedy, A.B., Nong, S., 2018. Finite-Element Barotropic Model for the Indian and Western Pacific Oceans: Tidal Model-Data Comparisons and Sensitivities. Ocean Model. 129, 13–38. doi:10.1016/j.ocemod.2018.07.003</ref><ref name=Pringle2>Pringle, W.J., Gonzalez-lopez, J., Joyce, B., Westerink, J.J., van der Westhuysen, A.J., 2019. Baroclinic Coupling Improves Depth-Integrated Modeling of Coastal Sea Level Variations around Puerto Rico and the U.S. Virgin Islands. J. Geophys. Res. Ocean. 124, 2196–2217. doi:10.1029/2018JC014682</ref>. The test finishes in about 8 minutes in parallel ADCIRC (2 processors) for 6 hours of simulation. Note that the short 6 hour length of the test is chosen to only limit simulation time for the [https://github.com/adcirc/adcirc-cg-testsuite/tree/v55/adcirc/adcirc_ideal_channel-2d-parallel GitHub test suite] where the test case been found. Users may extend the simulation length to simulate the inundating phase of the incoming wave.

	== Mesh ==		== Mesh ==

Wpringle at 01:58, 9 June 2020

2020-06-09T01:58:02Z

@@ Line 4: / Line 4: @@
 The mesh is comprised of 64,415 vertices and 127,784 triangular elements, with resolution in the 10-60 m range. The mesh is symmetrical in the east-west direction so that the east and west lateral boundary vertices match for the application of the periodic lateral boundary conditions. An elevation specified boundary condition and absorption-generation sponge layer is prescribed at the southern end of the domain.
-[[File:IdealChannel.png|1750px|thumb|Left: Mesh triangulation and resolution. Blue line shows the elevation specified boundary condition location, green and yellow lines on the sides show the periodic lateral boundary condition locations. Center: Mesh topo-bathy. Right: The sponge strength coefficients.]]
+[[File:IdealChannel.png|1000px|thumb|Left: Mesh triangulation and resolution. Blue line shows the elevation specified boundary condition location, green and yellow lines on the sides show the periodic lateral boundary condition locations. Center: Mesh topo-bathy. Right: The sponge strength coefficients.]]
-<br />
-<br />
+[[File:Channel_Elev.gif|500px|thumb|Elevation time series for the idealized channel problem]] [[File:Channel_Vel.gif|500px|thumb|North-south velocity time series for the idealized channel problem]]
 == Options/Features Tested ==

Wpringle: /* Options/Features Tested */

2020-06-08T23:34:10Z

Options/Features Tested

← Older revision		Revision as of 19:34, 8 June 2020
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	*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).		*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).
	*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.		*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.
	*[[Fort.14_file_format IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.		*[[Fort.14_file_format\|IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.

	== References ==		== References ==
	<references />		<references />

Wpringle: /* Options/Features Tested */

2020-06-08T23:33:45Z

Options/Features Tested

← Older revision		Revision as of 19:33, 8 June 2020
Line 40:		Line 40:
	*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).		*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).
	*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.		*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.
	[[IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.		*[[Fort.14_file_format IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.

	== References ==		== References ==
	<references />		<references />

Wpringle: /* Options/Features Tested */

2020-06-08T23:32:14Z

Options/Features Tested

← Older revision		Revision as of 19:32, 8 June 2020
Line 40:		Line 40:
	*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).		*<code>[[NOUTGM]]</code> = 5: Outputs the global meteorology into a netCDF4 [[fort.73 file]] (pressure) and a netCDF4 [[fort.74 file]] (velocity).
	*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.		*[[Fort.13_file#Absorption-generation_Sponge_Layer\|sponge_generator_layer]]: Applies a sponge layer to absorb outgoing waves while generating incoming waves. In this case incoming diurnal tidal waves are generated using the [[fort.53001]] and [[fort.54001]] input files.
			[[IBTYPE=94]]: Node pairs are matched along opposite lateral boundaries where a periodic (repeating) boundary condition is applied.

	== References ==		== References ==
	<references />		<references />